Computational Biomolecular Research
We are keen on understanding the mechanisms of enzyme catalysed reactions
employing QM/MM technique. Carbonic anhydrases specifically facinate
us due to their carbon capture properties. To address protein engineering problems,
we use a combination of hybrid electronic structure calculations,
classical force-field simulations and machine learning
to unravel the underlying biophysical-biochemical processes
governing protein stability, dynamics and reactivity.
Computational Catalysis
We use DFT calculations to develop insights into the working
of heterogeneously catalysed reactions. Development of free energy
landscapes of reactions involving carbon capture and utilisation,
clean energy and environment and certain organic reactions are
actively pursued by the research group. Using electronic structure
calculations, we have developed insightes into the working of
the catalysts reported for carbon dioxide hydration,
Suzuki reaction, CO oxidation, formic acid oxidation and
NOx reduction.
Computational Materials Research
Using electronic structure calculations,
we have developed structure-property relationships
governing the catalytic activities of transition metals,
transition and rare-earth oxides and carbonaceous materials.
Our recent focus has been on understanding the behaviour of
transition metal clusters which have been reported to exhibit
exceptional catalytic activities. Our DFT calculations with
catalytic materials enable rational design of
materials. We probe the effects of electronic structure of materials
using state-of-the-art computational methods involving
high-performance computing platforms.
Computational Molecular Research Laboratory
Department of Chemical Engineering
Indian Institute of Technology Jodhpur, India
About CMRL
We are a computational research group in the Department of Chemical Engineering, Indian Institute of Technology Jodhpur. We work at the interface of chemistry, biology, materials science and chemical engineering taking advantages of concepts from different disciplines for handling interesting scientific problems. In the words of Professor Gregory Ryskin, "the research interests of the group keep evolving". Equipped with high performance computing clusters, we are currently interested in developing molecular level insights into chemical and biological phenomena using first-principles quantum chemical calculations. A brief description of our research interests can be found below and the details of the latest activities can be found in our Research page. We will be happy to hear from you should you have any query regarding our research.
Lab Research Philosophy
"A scientist does not study nature because it is useful to do so. He studies it because he takes pleasure in it, and he takes pleasure in it because it is beautiful" - Henri Poincaré
The research undertaken by the group has a common underlying inspiration beautifully expressed by Henri Poincaré in the above quote. We strive to rigorously use the principles of quantum chemistry to understand interesting nature of the nature. The real world or industrial realisation of several of the systems studied by us may not be obvious, but we believe that they can, in principle, serve as a good starting point for dynamic researchers to think in the right direction.
The CMRL Team
Know the CMRL team...
and what they are engaged in currently...
Parag A. Deshpande
PAD advises the research group. He is a professor in the Department of Chemical Engineering. Click here to know more about him.
Ranvijay Singh
Ranvijay is looking forward to rationally improve the catalyst composition for biomimetic action of transition metal alloys for CO2 capture using DFT.
Shalu Yadav
Shalu is developing DFT calculations of 2-D materials exploring their utility as support materials for catalysis.
Kaushik Sachan
Kaushik aims to develop understanding of the behaviour of small transition metal clusters for potential gas-solid catalytic applications.
You can be here!
With a keen interest in computational research and readiness to devote quality time towards doctoral studies, you can find your place here
Our doctoral alumni
Manjusha C. Padole
Manjusha used DFT calculations to develop structure-property relations in ceria and fullerene-based catalysts
Subrahmanyeswara Rao
Subramaniam worked towards developing mechanistic insights into OPRTase action using QM/MM methods
Manju Verma
Manju worked on computational screening of biomimetic catalysts for carbon dioxide hydration
Sai Phani Kumar
Sai used DFT to demonstrate the effect of crystal planes and vacancies in substituted oxide catalysts
Pentyala Phanikumar
Phani worked towards developing structure-property relationships in rare-earth oxide catalysts using DFT
Shashi Kumar
Shashi worked towards protein engineering of SazCA using ML, MD and QM/MM methods
Prasad Reddy
Prasad's DFT calculations revealed catalytic properties of small-atom Pd clusters for Suzuki coupling
Ankita Agarwal
Working jointly with Professor R. Bahadur, Ankita worked on ML and MD analysis of RNA binding proteins
Saroj Kumari
Saroj worked towards developing finer details on suface catalysis for Ni for biomimetic CO2 capture using DFT
Swayam Prabha Misra
Swayam Prabha worked extensively towards developing computational models for geopolymers and their catalytic activities
Our Research
Know what we do 24X7...
and why we do that...
Computational Biomolecular Research
CMRL is interested in developing a molecular level understanding of mechanistic aspects of enzyme catalysed reactions. DFT and QM/MM calculations are being employed by the group to obtain potential energy surfaces of enzyme catalysed reactions. Systems of current interest to the group include those playing key roles in disease dynamics and biological carbon capture. We have also utilised machine learning for understanding the high temperature stability of thermostable proteins. We intend to develop protocols for improvement of thermostability of proteins involved in carbon capture. Please visit our Research page for more information.
Computational Catalysis and Materials Research
CMRL is engaged in developing rationale behind the working of heterogeneous catalytic systems. We achieve this by DFT description of catalytic surfaces thereby providing energetics of catalytic surface reactions. The group is also interested in developing structure-property relationships of catalytic materials to gain better insights into working of heterogeneous catalysts enabling rational catalyst design. The current catalytic systems of interest include high oxygen storage capacity inorganic oxides and nanoscale carbon structures, and the reactions of interest include catalytic carbon dioxide hydration and certain organic reactions. Please visit our Research page for more details.
News and Latest from the research group
Phani's article most downloaded!
Phani's article in Electrochemistry Communications gets a mention as one of the most downloaded articles by Elsevier!
Shashi in CHEMCON 2018!
Shashi's presentation in CHEMCON 2018 was adjudged as one of the best presentations. Well done Shashi!
Sai's best presentation in AIChE
Sai's presentation in AIChE Annual Fall Meeting 2017 was adjudged as the best presentation of the session. Great job Sai!
Manjusha's most accessed article!
Manjusha's article has been listed as one of the most accessed articles by Journal of Physical Organic Chemistry.
PAD joins PLOS ONE editorial board
PAD is now an academic editor of PLOS ONE!
Best BTP award to Jaya
Our student Jaya Agarwal has bagged the best BTP award for her work on computational catalysis. Congratulations Jaya!
Sai's joins Northwestern
Sai's moves ahead in his career after graduating from the lab to join Northwestern University as a postdoctoral fellow. Good luck, Sai!
Yet another best BTP award
One more best BTP award goes to the research group student, Vaibhav Upadhyay, for his work on biomolecular simulations. Great job, Vaibhav!
IECR cover page article
Our article on biomimetic carbon capture makes it to the cover of Industrial and Engineering Chemistry Research
Our UG footprints
Several of our UG project students have decided to pursue research and have made it to Stanford, Berkeley, UPenn and Cornell to mention a few. We are proud of their accomplishments
Fulbright fellowship to PAD
PAD has received the 2020-21 Fulbright fellowship for academic and professional excellence. He will spend his sabbatical in the US starting new research on machine learning applications to catalysis!
Mallika makes it big
We are proud share that our UG alumna, Mallika Saharia, has joined Harvard Business School for pursuing MBA. Congratulations Mallika!
Shashi joins Maryland
After working relentlessly on biomolecular simulations, Shashi has now joined the world-renouned MacKerell lab at U Maryland. Good luck, Shashi!
It's raining offers!
On receiving multiple offers for graduate studies, Vaibhav decides to join Cornell while Vinay chooses Boston. Congratulations Vaibhav and Vinay!
Phani is now a faculty!
It's a great pleasure for the research team to share that Phani has joined NIT Rourkela as an assistant professor. Congratulations Phani and good luck!
Prasad joins Ulsan
Prasad is now going to work with the University of Ulsan in South Korea. Good luck Prasad for your post-doctoral endeavours.
Manju joins MNNIT!
We are proud to share that our alumna, Manju Verma, has joined MNNIT Allahabad, Prayagraj, as an assistant professor. Congratulations Manju!
Manjusha's article on coverpage!
The article on halobenzene activation by heterofullerenes appears on the cover page of Journal of Physical Organic Chemistry.